| Owyhee Dam | Malheur, OR | 9.5 miles | SW |
| Golden Gate Drop | Canyon, ID | 12.4 miles | SE |
| Brown Dam | Owyhee, ID | 13.1 miles | SE |
| Mills Dam Number 1 | Malheur, OR | 13.1 miles | NW |
| Mills Dam Number 2 | Malheur, OR | 13.8 miles | NW |
| Mills Dam Number 3 | Malheur, OR | 15.1 miles | NW |
| Two Forks Check Dam | Malheur, OR | 15.2 miles | NW |
| Albertsons Dam | Malheur, OR | 16.1 miles | NW |
| Deer Flat-Lower Dam | Canyon, ID | 17.3 miles | SE |
| Deer Flat-Middle Dam | Canyon, ID | 18.2 miles | SE |
| Surmeier Dam | Payette, ID | 20.8 miles | NE |
| Deer Flat-Upper Dam | Canyon, ID | 21.5 miles | SE |
| Broken Rim Check Dam | Malheur, OR | 23.7 miles | NW |
| Brown Dam | Owyhee, ID | 26.7 miles | SE |
| King Dam | Owyhee, ID | 27.7 miles | SE |
| Bully Creek Dam | Malheur, OR | 28.8 miles | NW |
| Tyson Dam | Owyhee, ID | 33.7 miles | SE |
| Squaw Creek Dam | Malheur, OR | 33.8 miles | NW |
| Texas Basin Dam | Owyhee, ID | 34.7 miles | SE |
| Haw Creek Dam | Gem, ID | 34.8 miles | NE |
| Harper Dam | Malheur, OR | 34.9 miles | NW |
| Moores Hollow Dam | Malheur, OR | 35.6 miles | NW |
| Black Canyon Dam | Gem, ID | 35.7 miles | NE |
| Bettis Number Three Dam | Payette, ID | 36.5 miles | NE |
| Little Dam | Gem, ID | 36.5 miles | NE |
| Hubbard Dam | Ada, ID | 36.7 miles | SE |
| David Kent Dam | Malheur, OR | 37 miles | SW |
| Morrison Dam | Malheur, OR | 37.2 miles | NW |
| Bettis Number Two Dam | Payette, ID | 37.3 miles | NE |
| Bettis Dam | Payette, ID | 37.4 miles | NE |
| Butte Dam | Malheur, OR | 38.3 miles | SW |
| Black Canyon Creek Dam | Malheur, OR | 38.8 miles | SW |
| Cheyally Dam | Malheur, OR | 39.7 miles | SW |
| Corless Dam | Malheur, OR | 41 miles | SW |
| Nicholson Dam | Ada, ID | 41.5 miles | SE |
| Gatfield Number Two Dam | Gem, ID | 41.9 miles | NE |
| Vane Ranch Dam | Malheur, OR | 42 miles | NW |
| Galloway Dam | Washington, ID | 42.2 miles | NE |
| Paddock Valley Dam | Washington, ID | 42.7 miles | NE |
| Scott Creek Dam | Washington, ID | 42.9 miles | NE |
| Rock Dam | Malheur, OR | 43.4 miles | SW |
| Parks Dam | Malheur, OR | 44.1 miles | SW |
| Swain Number Two Dam | Washington, ID | 44.5 miles | NE |
| Barton Dam | Washington, ID | 45 miles | NE |
| Shumway Dam | Malheur, OR | 45.5 miles | SW |
| Swan Falls Dam | Ada, ID | 45.6 miles | SE |
| Swain Number One Dam | Washington, ID | 45.8 miles | NE |
| Benson Dam | Baker, OR | 45.9 miles | NW |
| Pacific Land Company Dam | Owyhee, ID | 46.7 miles | SE |
| Delamar Tailings Dam | Owyhee, ID | 46.8 miles | SE |
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